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Manila To Kota Kinabalu Flights

  • One-Way
  • Round-Trip
  • Multi-City

From

Indira Gandhi International Airport

To

Chhatrapati Shivaji International Airport

DEPARTURE DATE

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Friday

Return Date

Book a round trip
to save more

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TRAVELLER & CLASS

1 Traveller

Economy

April
August
September
October
November
December
January
February
March

April is by far the best month, wherein you can get cheapest flights for Manila to Kota Kinabalu. Meanwhile, is perceived as the expensive month due to the varying factors. That’s why it’s highly advised to make advanced online flight booking to save huge amounts of money.

disclDisclaimer - All the mentioned fares were found within last 48 hrs. The displayed fares are based on historical data and are subject to change. The fares cannot be guaranteed at the time of booking.

Best Flight From Manila To Kota Kinabalu

Royal Brunei Airlines
Royal Brunei Airlines

Manila

21:45

Ninoy Aquino International Airport [MNL]

Fri , 10 Apr 2026

18h 25m
ellipse
1 Stop

Kota Kinabalu

16:10

Kota Kinabalu International Airport [BKI]

Sat, 11 Apr 2026

$182
Royal Brunei Airlines
Royal Brunei Airlines

Manila

15:00

Ninoy Aquino International Airport [MNL]

Sat , 02 May 2026

04h 05m
ellipse
1 Stop

Kota Kinabalu

19:05

Kota Kinabalu International Airport [BKI]

Sat, 02 May 2026

$182
China Southern Airlines
China Southern Airlines

Manila

17:45

Ninoy Aquino International Airport [MNL]

Fri , 10 Apr 2026

24h 35m
ellipse
1 Stop

Kota Kinabalu

18:20

Kota Kinabalu International Airport [BKI]

Sat, 11 Apr 2026

$229
Malaysia Airlines
Malaysia Airlines

Manila

12:50

Ninoy Aquino International Airport [MNL]

Fri , 10 Apr 2026

08h 45m
ellipse
1 Stop

Kota Kinabalu

21:35

Kota Kinabalu International Airport [BKI]

Fri, 10 Apr 2026

$229
China Southern Airlines
China Southern Airlines

Manila

17:45

Ninoy Aquino International Airport [MNL]

Sat , 02 May 2026

24h 35m
ellipse
1 Stop

Kota Kinabalu

18:20

Kota Kinabalu International Airport [BKI]

Sun, 03 May 2026

$229
Malaysia Airlines
Malaysia Airlines

Manila

06:50

Ninoy Aquino International Airport [MNL]

Fri , 10 Apr 2026

07h 25m
ellipse
1 Stop

Kota Kinabalu

14:15

Kota Kinabalu International Airport [BKI]

Fri, 10 Apr 2026

$242
Malaysia Airlines
Malaysia Airlines

Manila

15:05

Ninoy Aquino International Airport [MNL]

Sat , 02 May 2026

07h 50m
ellipse
1 Stop

Kota Kinabalu

22:55

Kota Kinabalu International Airport [BKI]

Sat, 02 May 2026

$242
Philippine Air lines
Philippine Air lines

Manila

07:20

Ninoy Aquino International Airport [MNL]

Fri , 10 Apr 2026

08h 15m
ellipse
1 Stop

Kota Kinabalu

15:35

Kota Kinabalu International Airport [BKI]

Fri, 10 Apr 2026

$245
Philippine Air lines
Philippine Air lines

Manila

07:20

Ninoy Aquino International Airport [MNL]

Sat , 02 May 2026

08h 15m
ellipse
1 Stop

Kota Kinabalu

15:35

Kota Kinabalu International Airport [BKI]

Sat, 02 May 2026

$245
Scoot
Scoot

Manila

06:55

Ninoy Aquino International Airport [MNL]

Sat , 02 May 2026

12h 35m
ellipse
1 Stop

Kota Kinabalu

19:30

Kota Kinabalu International Airport [BKI]

Sat, 02 May 2026

$259
Singapore Airlines
Singapore Airlines

Manila

18:35

Ninoy Aquino International Airport [MNL]

Fri , 10 Apr 2026

24h 55m
ellipse
1 Stop

Kota Kinabalu

19:30

Kota Kinabalu International Airport [BKI]

Sat, 11 Apr 2026

$305
ellipse

Early Morning Flight Manila to Kota Kinabalu

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Cheapest Flight
Found
$242
group
Average Flight
Time
07h 25m
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Date/Time
10 Apr 2026
06:50 AM
plane
Airlines
Malaysia Airlines
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Late Night Flight Manila to Kota Kinabalu

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Cheapest Flight
Found
$182
group
Average Flight
Time
18h 25m
calendar
Date/Time
10 Apr 2026
21:45 PM
plane
Airlines
Royal Brunei Airlines